gnocis
==============

Gnocis is divided into a number of modules, with discrete functions.

gnocis.biomarkers module
------------------------

.. automodule:: gnocis.biomarkers
   :members:
   :undoc-members:
   :show-inheritance:

gnocis.common module
--------------------

.. automodule:: gnocis.common
   :members:
   :undoc-members:
   :show-inheritance:

gnocis.features module
----------------------

.. automodule:: gnocis.features
   :members:
   :undoc-members:
   :show-inheritance:
   :exclude-members:
        kSpectrumFeature, kSpectrumMMFeature, kSpectrumFeaturePDS

gnocis.models module
--------------------

.. automodule:: gnocis.models
   :members:
   :undoc-members:
   :show-inheritance:
   :exclude-members:
   		multiprocessModelDeployer, initializePoolProcess, setPoolProcessID, getPoolProcessID, getPoolProcessModelID, initializePoolProcessIDs, getPoolProcessIDs, getPoolModelIDs, setPoolProcessModel, setPoolModel, getPoolProcessHasModel

gnocis.motifs module
--------------------

.. automodule:: gnocis.motifs
   :members:
   :undoc-members:
   :show-inheritance:

gnocis.regions module
---------------------

.. automodule:: gnocis.regions
   :members:
   :undoc-members:
   :show-inheritance:

gnocis.sequences module
-----------------------

.. automodule:: gnocis.sequences
   :members:
   :undoc-members:
   :show-inheritance:
   :exclude-members:
		weightedRandomChoice, streamFASTASeq, stream2bitNBlock, stream2bitSeq, sequenceStreamGeneratorSequence, sequenceStreamGenerator

gnocis.sklearnModels module
---------------------------

.. automodule:: gnocis.sklearnModels
   :members:
   :undoc-members:
   :show-inheritance:

gnocis.sklearnModelsOpt module
------------------------------

.. automodule:: gnocis.sklearnModelsOpt
   :members:
   :undoc-members:
   :show-inheritance:

gnocis.validation module
------------------------

.. automodule:: gnocis.validation
   :members:
   :undoc-members:
   :show-inheritance: